March 2022 – Darkmatter

Preprint: Metagenomic binning with assembly graph embeddings

Our preprint describing GraphMB is now available on bioarxiv.

Lamurias, A., Sereika, M., Albertsen, M., Hose, K., & Nielsen, T. D. (2022). Metagenomic binning with assembly graph embeddings. BioRxiv, 2022.02.25.481923. https://doi.org/10.1101/2022.02.25.481923

Link: https://www.biorxiv.org/content/10.1101/2022.02.25.481923v1

GraphMB software package

GraphMB is a Metagenomic Binner developed for long-read assemblies, that takes advantage of graph machine learning algorithms and the assembly graph generated during assembly. It has been tested on (meta)flye assemblies.

Link: https://github.com/MicrobialDarkMatter/GraphMB